Architecture · Technical

The cortex, mapped.

Synthetic Cortex defines how thinking is structured, not what a model is trained on. It attaches to an existing language model and organises inference through parallel, specialised subsystems that all read from one shared neurochemical state. This page shows the pipeline as far as we publish it.

01 — Pipeline

Signal path, end to end.

Tap any node. Solid lime lines carry the main signal, cyan lines carry emotional state, grey lines are internal hand-offs. Red nodes were closed by the agent that prepared this page. Dashed nodes are branches we have not disclosed yet.

Signal flowEmotional stateRedacted by agentUndisclosed branchScroll sideways on small screens →
The pipeline in words
  1. Input streams arrive: conversation, letters and messages, behaviour, device state.
  2. A relay stage routes them and pre-filters by salience.
  3. Affect scoring places each input on valence, arousal and dominance.
  4. The Limbic-2 engine updates thirteen coupled neurochemical channels; a mood space, an emotional trace memory, a hypothalamic body signal and a homeostatic regulator act on it.
  5. Threshold gates translate the state into which processes fire.
  6. Parallel layers run: spiking networks, layered memory, Manifold A ⇄ B, the perception network, the default mode network, associative recall, selective perception, self-space, metacognitive review, and one withheld layer.
  7. Equalia and the deep layers stack inference seven levels deep each.
  8. Hidden context synthesis gathers every channel into what the model sees; output steering and expert delegation feed it; sampling coupling is withheld.
  9. The language model answers. The answer re-enters at affect scoring.
What is not shown

Closed on purpose.

Gate definitions, the conversion from affective coordinates to neurochemical levels, the coupling between state and generation parameters, the exact channel set of the hidden-context manager, and several modules in development are not published. The diagram is accurate in shape and deliberately incomplete in detail.

WhyThe value of the architecture is in its orchestration. The components are public science; the way they are wired together is not.

02 — How it differs

Not a prompt technique. Not a RAG pipeline. Not fine-tuning.

Most systems change what a model sees or what it has memorised. Synthetic Cortex changes the conditions under which it thinks.

DimensionPrompted LLMRAG pipelineFine-tuned modelSynthetic Cortex
Decides what the model seesThe promptSimilarity to the queryAlready in the weightsA neurochemical state, gates and associative recall
Reasoning startsWhen askedWhen askedWhen askedWhen an internal gate crosses its threshold
New knowledge livesIn the context windowIn an external indexIn changed weightsIn layered memory, parallel spaces and hidden context (L2: latent space)
Base weightsFrozenFrozenModifiedFrozen
Retrieval timing—Once, before inference—Re-evaluated as inference evolves (L2) · emotion-weighted (M1)
Role of emotionTone, if anyNoneStyle learnt from dataCentral regulator of priority, gating and consolidation
ForgettingWhen the session endsRarelyRisk of catastrophic forgettingHomeostatic, tier by tier, leaving traces
ExplainabilityLowCited sourcesLowGates crossed, channels fired, per-module logs
From tokens to meaning

Pattern engineering, not prompt engineering.

Prompt engineering works on what the model observes at the surface. The cortex works one level down: on how the model relates, organises and navigates meanings it has already inferred. Tokens are entry points into that space, not the objects of reasoning.

Versus classic data science

Relations are designed, not just discovered.

A conventional data pipeline engineers features and lets correlations emerge from volume. Implicit relation engineering shapes the relational geometry itself — which concepts resonate, which decay — so new information lands in an existing network of meaning instead of being learnt from scratch.

Versus agent frameworks

Orchestration by state, not by script.

Agent frameworks route by rules and planners. Here the same input can fire different modules on different days, because routing depends on an evolving internal state with momentum, coupling and balance — closer to a regulated system than a flowchart.

03 — Research programme

Seven phases, one cumulative architecture.

Each phase addresses a specific limitation of current language models and adds a capability on top of the previous ones, without growing the core parameter count. Open any phase for its dossier.

PHASE 01

Emotional reasoning via neurochemical modelling

Neurochemical signals modelled mathematically and mapped onto continuous control variables that reshape inference.

Completed
PHASE 02

Internal learning through dynamic adapters

Knowledge embedded during interaction while the base model stays frozen.

In research
PHASE 03

Latent space injection for capacity expansion

Structured knowledge injected into latent space during inference, without scaling parameters.

Completed
PHASE 04

Activation-based chain-of-thought extraction

Reasoning drawn from the model's own activations instead of imposed prompt structures.

Largely complete
PHASE 05

Implicit relation engineering & manifold geometry

Meaning as trajectories on a curved surface rather than distances in a flat space.

In development
PHASE 06

Associative reasoning via default-mode dynamics

Controlled traversal of concept space beyond the immediate task.

In development
PHASE 07

Cultural resonance & contextual relativity

The same concept interpreted through different cultural lenses.

In development
04 — Limbic-2

Emotional loads as an inter-module protocol.

Limbic-2 is the current emotional engine. Its predecessor, Limbic v1, was retired and archived; the present design goes beyond representing affect and doubles as a communication protocol between cortices. In the main system, parallel auxiliary computations run during inference across the later transformer layers — where abstract patterns have already formed — and the contextual signal extracted there is analysed on valence, arousal and dominance. The dominant context is amplified, alternative contexts are kept as controlled deviations, and the result is re-expressed as thirteen neurochemical values.

Each cycle integrates with the previous one in a way that lets older cycles fade gradually rather than averaging them away, so the state has memory without being stuck. The output is a set of emotional loads that every other module is normalised against.

Direct effects

Inside the architecture.

Emotional loads guide internal learning, latent injection and activation steering; they shape activation-based reasoning, default-mode association and cultural resonance. Weights produced by the model are deliberately modulated with these loads, triggering different probability protocols and shifting the overall reasoning flow.

Indirect effects

Thresholds for everything else.

The same values set the thresholds for memory synchronisation, arousal regulation, salience filtering, episodic updates, contextual persistence and logical consistency — and for any external module a developer attaches. The system stays in balance because every operation is computed relative to its current state.

Classified

Affect → neurochemistry weighting

The mapping that turns valence, arousal and dominance into thirteen channel levels, and the coupling between those levels and generation parameters, are withheld in this release.

See the public interaction matrix and the live frequency lab →

05 — Parallel spaces

Manifold A for meaning. Manifold B for emotion.

MANIFOLD A · SEMANTICMANIFOLD B · EMOTIONAL LOADSTHRESHOLD → REDIRECT

Language models typically process information in a flat, Euclidean space where distances are straight lines and activation spreads globally: when one concept lights up, distant and irrelevant concepts are pulled into the computation too. A manifold organises information along a curved surface. Points that look far apart in vector space can be close along the surface, and what matters is proximity along it.

The cortex keeps two such spaces in parallel. A state computed in one is not copied into the other as raw data; it crosses as an emotional context and a priority signal. Each point interacts only with its local neighbourhood, so the system reasons over a small relevant region instead of the whole space — which is also how the cost of manifold methods is kept down. Model weights stay fixed; only the path the data takes is curved.

Manifold A

Directed semantic re-mapping.

A semantic core is extracted from internal activations and projected along directions that correspond to different conceptual or cultural frames, then mapped back to text. Abstractions emerge from relational convergence rather than from memorised sequences.

Manifold B

An isomorphic emotional twin.

Same geometry, different job. Emotional loads from the current input, recent dialogue and episodic history are mapped onto every point of A. When accumulated load crosses a threshold, B can redirect A's reasoning trajectory.

On the phone

Manifold memory in M1.

The mobile cortex keeps every record in two parallel spaces. When a topic comes up, emotionally intense records close to it come forward, and the Reflection takes them into account — with a ceiling on how strongly that shows.

See it in the atlas
06 — Activation as reasoning

Reasoning as a computation, not a narrative.

Chain-of-thought prompting asks a model to write its reasoning out. That improves local coherence but stays at the level of text, and it remains tied to the distributions of the training data. In the main system, reasoning is grounded in the model's real-time activations: the cortex observes which semantic relations the model itself activates and raises their neighbouring clusters into the active context. Retrieval is not a single step before inference; targets are re-evaluated as decision-layer activations evolve, tying vector proximity and decision dynamics into one flow.

In the emotional engine, the trigger for this mode is chemical: when the glutamate-analogous channel crosses its gate, chained reasoning engages; when the prolactin-analogous channel crosses its own, the loop is closed. No prompt tells the model to "think step by step".

Benefits

Faithful, controllable, debuggable.

No weight updates, no fine-tuning; the architecture monitors existing representations and builds relational structure on top of them. Particularly suited to research-heavy domains and to agent reflection phases that need adaptive context reconstruction.

Open challenges

Stated plainly.

Activation-guided selection can drift into confirmation bias if early anchors over-constrain retrieval. Monitoring adds latency, mitigated by parallelism. Quality depends on the embedding pool behind it.

07 — Capacity & context

More knowledge without more parameters.

Latent injection · L2

Knowledge placed where the model thinks.

Instead of storing information in weights or passing it as raw text, structured knowledge is injected into latent space during inference, where it interacts with internal representations as if it were already encoded. Core parameters remain unchanged, so cost and instability stay low.

Context density · M1

Hidden context on a phone.

Without access to a model's internals, the mobile cortex arranges data on the device with small embedding models and injects it as hidden context. Concepts that sit far apart in the model's meaning space are brought into one window — the indirect route to the same effect.

How M1 differs
08 — Creativity module

Analytical rigour and associative reach, decoupled and re-coupled.

Richer relational training makes models more creative and less consistent. Most systems settle on a compromise. The cortex separates the two: an analytically oriented layer produces structured reasoning and extracts conceptual anchors; a specialised associative layer, trained on deliberately dense cross-domain relations, expands only within those anchors; the analytical layer then re-grounds the result. Expansion mode is entered only when synthetic affective signals cross their thresholds.

Emotion-gated

Moments of depth without persistent instability.

Because the creative layer fires on affective thresholds, enrichment appears spontaneously where context calls for it — not on every turn.

Restricted

External MoE experts

Completed. Information access restricted for commercial confidentiality.

09 — Cultural relativity

Meaning is situated, not averaged.

Training dynamics push culturally contingent concepts — legitimacy, respect, authority, family, freedom — toward one dominant statistical interpretation. The result is abstraction loss: the model stores an average where a society has a frame. The cortex targets the relational geometry around a concept, reshaping how activation propagates through its neighbours so that interpretation shifts with the active cultural resonance profile. Emotional loads keep the module dormant unless a dominant perturbation calls for it.

In Generation Network, a first consumer-facing expression of this idea is the Time Machine: an idea is read through how different historical periods would receive it.

10 — M1 · the mobile cortex

L1.5: the leanest build, by necessity.

The main system connects to open models and reads weights during inference to synthesise its neurochemical state; it can then steer the model's geometric latent space directly. A phone cannot carry that processing volume, and the mobile build was designed to keep personal mental models on the device. So M1 removes a large part of L2 and re-engineers the rest.

  • State without the model's weights. A predefined weighting route with an adapted dominance tone replaces weights read from inference. The evaluation system is similar; the advantages of model-derived weights are given up.
  • Steering without access to internals. Small external models embed data on the device and steer its arrangement locally; hidden contextual information is injected to shift the semantic space. Results are close, especially for semantic-space shifts, though not identical to L2.
  • Emotion-triggered recall. When certain emotional states are triggered, short inferences are retrieved from local memory, selected by an emotional recall ratio alongside cosine similarity. Close-but-unrelated records can join associatively, the way an unrelated memory surfaces mid-conversation.
  • Slow learning by design. Background learning runs whenever the phone is idle and yields to the user immediately. Dedicated components watch battery and memory.

The outcome is not L2 on a phone. It is a system that reaches several of the same effects indirectly — and does far more than an average chat layer. Every M1 module is listed in the Cortex Atlas.

11 — Position

What this is, and what it is not.

It is

A formal emulation of mechanisms.

An attempt to abstract, mathematically, the functional processes that give rise to reasoning in biological cognition — learning, using what was learnt, adapting, solving problems — and to unify them under one architecture that is open in two directions: special-purpose "brain regions" for specific needs, and broader cognitive capability on the same infrastructure.

It is not

AGI, a mind, or a feeling machine.

The project does not aim to build artificial general intelligence or an independent intelligent system. Its neurochemistry is a set of mathematical models. Benchmarking is ongoing; claims on this site describe design intent and internal observations.

Phase 1 · Completed

Emotional reasoning via neurochemical modelling

Human decision-making is not purely logical; it is continuously modulated by hormones and neurotransmitters. Phase 1 models these signals mathematically and maps them onto latent modulation coefficients that influence internal activations during inference.

Rather than encoding emotions as symbolic labels, synthetic affective states are continuous control variables that reshape the latent geometry of the model. Emotional context therefore changes relevance weighting, associative strength and inference trajectories. The result is emotion-conditioned reasoning patterns — the first step toward synthetic affective cognition.

Thirteen channels are modelled: dopamine, serotonin, oxytocin, vasopressin, endorphin, adrenaline, noradrenaline, cortisol, testosterone, estrogen/progesterone, GABA, glutamate and prolactin. They interact as coupled oscillators — directional, context-dependent and able to reverse as conditions change. In neuroscience this is called effective connectivity; in systems theory, a nonlinear coupled system.

Phase 2 · In research

Internal learning through dynamic adapter structures

Language models usually need fine-tuning or an external memory to take in new information. Phase 2 lets knowledge be embedded during interaction while the base parameters stay frozen.

Deep networks are sensitive to structural change: one altered layer can cascade unpredictably. So the backbone is frozen and small learnable adapter blocks — a fraction of the base model's size — are inserted between selected layers. What distinguishes the approach is not the adapters but how information reaches them: conversational input is pre-processed into structured representations derived from the model's own hidden-state statistics, consolidated into matrix form and integrated incrementally.

Short-term interaction data accumulates until relevance thresholds are reached, passes through a deeper stage analogous to a default-mode network where it is related, abstracted and reformatted, and is then embedded in a long-term adapter layer that every later forward pass uses — no prompt expansion, no external store. Benefits appear over extended use, much like biological consolidation.

Preliminary details of this phase are closed.

RelatedRoadmap
Phase 3 · Completed

Latent space injection for capacity expansion without scaling

Phase 3 shows that effective knowledge capacity can grow without growing the model. Large volumes of structured knowledge are injected directly into the latent space during inference, where they interact with internal representations as though they were already encoded.

Because core parameters do not change, computational cost and instability stay minimal. Parameter count turns out not to be the main bottleneck for using knowledge: combined with the right internal control signals, latent manipulation approximates the behaviour of much larger models.

A side effect matters for every deployment: since knowledge is pre-placed in latent space, prompts no longer need to carry it as text, and the existing context window is used far more efficiently.

RelatedCapacity & context
Phase 4 · Largely complete

Activation-based chain-of-thought extraction

Phase 4 recasts chain-of-thought as an internal process. Instead of generating reasoning steps as extra tokens, intermediate activations are analysed to identify which semantic directions are contributing to a decision, and those activated concepts are selectively reintroduced into the contextual representation in real time.

Reasoning emerges from the model's own dynamics rather than from injected reasoning traces. This reduces the side effects of prompt-based chain-of-thought and increases the transparency and controllability of inference.

RelatedSection 06
Phase 5 · In development

Implicit relation engineering and semantic manifold geometry

Phase 5 moves the focus from token representations to the geometry of abstract meaning. Semantic relationships become points and trajectories on a curved manifold rather than distances in a flat vector space. Implicit associations — metaphor, analogy, cultural connotation — are modelled through local neighbourhood structures.

Take "eyes like the sky". No colour is named, yet the expression settles near blue, openness, depth and sea. The proximity comes not from shared words but from geometry formed by repeated co-activation. Unrelated associations stay on distant slopes of the surface.

By engineering these relations explicitly, the model forms deeper connections with minimal data, enabling controlled abstraction beyond surface-level correlation.

Related
Phase 6 · In development

Associative reasoning via default-mode-network-inspired dynamics

When the human brain is idle it forms distant conceptual links. Phase 6 gives the model a subsystem that traverses concept space beyond the immediate task context, exploring related regions under controlled constraints — non-linear patterns similar to free association.

The mechanism supports creative reasoning, insight and hypothesis formation, and is held back from uncontrolled divergence by the affective and semantic constraints of the earlier phases. The mobile cortex already runs a working version of this idea on-device: the Default Mode Network module.

RelatedDMN in the atlas
Phase 7 · In development

Cultural resonance and contextual relativity modelling

Language models tend to collapse diverse cultural interpretations into one dominant representation. Phase 7 introduces culturally distinct resonance patterns as latent directional biases, so concepts are interpreted through different lenses depending on the active profile.

The same concept can then lead to different inferences depending on social norms, historical context or collective memory. Meaning becomes a relative and situated phenomenon instead of a fixed statistical average.

RelatedTime Machine
Method

Implicit relation engineering (IRE)

From tokens to abstract meaning. Most optimisation targets tokens: prompt design, attention manipulation, surface embedding control. But tokens are entry points into a deeper representational system where meanings, not words, interact. IRE shifts the objective from what the model observes to how it internally relates and navigates what it has already inferred — from syntactic engineering to semantic geometry engineering.

Meaning as a dynamic manifold. Locally flat, curved at scale. Each concept acts as a local attractor that bends nearby regions, and the geometry reconfigures with every prompt: meaning emerges through motion in this space, not through lookup.

Implicit relations and resonance. Non-symbolic associations arise from repeated co-activation and live as geometric proximities and directional tendencies. A sentence expands outward from a semantic centre; resonant regions amplify each other, irrelevant ones decay, and the output is the equilibrium of that resonance. This is why rich data often beats merely large data: richness sculpts curvature, scale mostly adds surface area.

Engineering the relations. IRE turns these relations from emergent by-products into designed structures under a coherent internal theory of meaning, so theory-consistent abstractions are preferred over raw frequency.

Controlled specialisation. Generality is traded deliberately for domain resonance — new information slots into an existing resonance network, giving strong few-shot behaviour. The echo-chamber risk is real, but a theory-constrained geometry makes deviations detectable, which improves explainability.

Stability. Small curvature errors can amplify into semantic drift. Mitigations under investigation include regularising relational strength, energy-based constraints on semantic motion and balancing local adaptation against global coherence. A layered strategy — a formal semantic boundary layer, implicit relational pairs at data level, combined reconstruction/contrastive/regularisation objectives and adaptation-stage steering — yields controlled resonance instead of unconstrained associative spread.

RelatedComparison
Parallel spaces

Inside Manifold A — the semantic space

Activation steering is used here not only as control but as semantic displacement. A semantic core is extracted from internal activations and projected along directional vectors that correspond to distinct cultural, conceptual or epistemic frames.

Token ecosystems. Concepts sit inside dense networks of latent associations. Prompts implicitly decide which regions become reachable, so some knowledge stays dormant even though it is encoded. Without intervention, a model favours statistically dominant associations.

Mapping. Activations from selected layers are clustered by relation; a projection shifts the semantic core along chosen directions; the transformed representation returns to text through the output matrix. Variants with different vocabularies are aligned on a shared axis through embedding clustering and similarity or knowledge-graph bridges, exposing invariants that ordinary prompting rarely surfaces.

Example. Merging aligned variants produced the shared abstraction "Loneliness corresponds to the perception of the self's own reflection" — not retrieved from training data but converging from independently projected spaces — and from it a composite synthesis across neuroscience, consciousness and immune systems: in protecting themselves, systems begin to hear themselves.

The method improves inference on topics that are weakly represented, fragmented or absent in training data.

Related
Parallel spaces

Inside Manifold B — the emotional space

Manifold B is topologically and geometrically isomorphic to Manifold A, but it is not a passive mirror. Multi-component emotional loads, applied to the model's intermediate layers, give it an active role.

Its representation combines the affective load of the current input, emotional residue from previous dialogue and states preserved in episodic memory. The result is mapped onto every point of A and propagated into B at the same coordinates, preserving point-wise correspondence.

The two spaces interact continuously. When accumulated loads exceed predefined thresholds, B can redirect or perturb the active trajectory in A, changing the model's reasoning flow. Emotion becomes a structural participant in decisions, not a modifier applied afterwards.

RelatedNeurochemistry
Method

Activation as reasoning: dynamic, inference-driven context construction

No scratchpads, reasoning vectors or injected chain-of-thought. The system continuously observes which semantic relations the model activates and elevates neighbouring clusters into the active context. Context expansion, when it happens, is limited to optional auxiliary tokens that broaden coverage rather than dictate steps.

Dynamic retrieval. Classical RAG retrieves independently of inference. Here, clusters selected by vector similarity are re-evaluated as decision-layer activations evolve, turning retrieval into an activation-driven process tied to the reasoning trajectory.

Unified signals. Similarity identifies semantically close clusters; decision-layer activations decide their relevance. They are interpreted jointly, not as separate channels.

No parameter changes. The architecture passively monitors and builds relational structure on top, reducing the side-effect risk associated with intervention techniques while improving transparency.

Where it fits. Legal review, literature analysis, technical documentation, and agent systems during reflection phases where plans need adaptive context reconstruction.

RelatedSection 06
Module · L2

Emotion-gated dual-layer creativity modulation

Base training rewards analytical depth along single axes — definition, cause, procedure. Relational richness usually arrives later through dense fine-tuning that makes models inventive and less coherent, so most systems moderate creativity to stay stable.

This module, part of the cortex's second layer, splits the functions. Layer one is an analytical model responsible for precision and structure, which also extracts salient conceptual anchors. Layer two is a low-rank adaptation trained only on analogical, cross-domain data with elevated associative density, activated only inside the boundaries set by those anchors. Its relationally expanded representation returns to the analytical model, which filters, restructures and grounds it.

The loop — structured generation, controlled expansion, rational consolidation — is gated by synthetic affective signals. Only when thresholds are crossed does the system enter expansion mode, producing moments of unexpected depth without persistent instability.

RelatedSection 08
Method

Cultural relativity modelling in abstract meaning spaces

Abstract cultural constructs take their meaning from interpretive frames, not from word forms. Legitimacy, respect, authority and social boundaries do not carry invariant weights across societies, yet standard architectures have no mechanism to select or modulate frames, so they encode context-free averages. Even with diverse data, optimisation converges on dominant correlations and compresses cultural topology.

Geometrically, models operate on flat or weakly curved spaces where neighbourhoods follow global statistical proximity, suppressing culture-specific deviation in favour of consensus.

The intervention reshapes the correlation structure of the neighbours around a target concept rather than the concept itself. That changes how associative activation propagates, so interpretation becomes sensitive to context. Cultural relativity is treated as a structural property of semantic geometry: differences arise from shifted activation patterns, not from changed tokens. Representational expressiveness grows without sacrificing internal coherence.

RelatedTime Machine